Publications

​Raveendar Sebastin*, Jaewook Kim*, Ick-Hyun Jo, Ju-Kyung Yu, Woojong Jang, Seahee Han, Hyun-Seung Park, Amal Mohamed AlGarawi, Ashraf Atef Hatamleh, Yoon-Sup So, Donghwan Shim†, Jong-Wook Chung† (2024) Comparative chloroplast genome analyses of cultivated and wild Capsicum species shed light on evolution and phylogeny. BMC Plant Biol. Aug 24;24(1):797. doi: 10.1186/s12870-024-05513-7

 

Jaewook Kim*, Yeon Woo Sung*, Jung-Wook Yang, Ki Jung Nam, Kang-Lok Lee, Donghwan Shim†, Yun-Hee Kim† (2024) Genetic variations underlying root-knot nematode resistance in sweetpotato. Gene. 2024 Aug 24:148895. doi: 10.1016/j.gene.2024.148895.

 

Jaewook Kim*, Jung-Wook Yang*, Kang-Lok Lee, Ki Jung Nam, Donghwan Shim†, Yun-Hee Kim† (2024) Differential expression of sweetpotato nodulin 26-like intrinsic protein (NIP) genes in response to infection with the root knot nematode. Plant Biotechnology Reports doi: 10.1007/s11816-024-00923-3

 

Jaewook Kim*, Yunmi Park*, Suyun Moon, Ji-Ae Seo, Jisook Moon, Hyeonseon Park, Bae Young Choi, Sebastin Raveendar, Cheol-Woo Kim†, Jong-Wook Chung†, Donghwan Shim†. A comprehensive analysis integrating phenotypic assessment uncovering thornless cultivar lineages in Aralia elata. Genomics. 2024 May;116(3):110824. doi: 10.1016/j.ygeno.2024.110824. Epub 2024 Mar 12. PMID: 38485062.​

 

​Jin Jeon, Md Mizanor Rahman, Hee Wook Yang, Jaewook Kim, Ho-Jun Gam, Ji Young Song, Seok Won Jeong, Jeong-Il Kim, Myoung-Goo Choi, Dong-Ho Shin, Giltsu Choi, Donghwan Shim, Jae-Hoon Jung, In-Jung Lee, Jong-Seong Jeon†, Youn-Il Park † (2023) Modulation of warm temperature-sensitive growth using a phytochrome B dark reversion variant, phyB[G515E], in Arabidopsis and rice. Journal of Advanced Research. doi: 10.1016/j.jare.2023.11.001

 

Yeon Woo Sung*, Jaewook Kim*, Jung-Wook Yang, Donghwan Shim†, Yun-Hee Kim† (2023) Transcriptome-Based Comparative Expression Profiling of Sweet Potato during a Compatible Response with Root-Knot Nematode Meloidogyne incognita Infection. Genes. doi: 10.3390/genes14112074​
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Jaewook Kim*, Jung‑Wook Yang*, Donghwan Shim†, Yun‑Hee Kim† (2023) Expression analysis of sweet potato patatin‑like protein (PLP) genes in response to infection with the root knot nematode Meloidogyne incognita. Plant Biotechnology Reports. DOI: 10.1007/s11816-023-00868-z

 

Bae Young Choi, Hyeonseon Park, Jaewook Kim, Sihan Wang, Joohyun Lee, Youngsook Lee, and Donghwan Shim (2023) BLZ8 activates a plastidial peroxiredoxin and a ferredoxin to protect Chlamydomonas reinhardtii against oxidative stress. Plant Biology. DOI: 10.1111/plb.13552
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Jaewook Kim*, Yeongbae Yun*, Jeonghoon Huh, Yurry Um†, Donghwan Shim† (2023) Comparative transcriptome analysis on wild-simulated ginseng of different age revealed possible mechanism of ginsenoside accumulation. Plant Physiology and Biochemistry. DOI: 10.1016/j.plaphy.2023.107870

 

Kyoung Rok Geem*, Jaewook Kim*, Wonsil Bae, Moo-Geun Jee, Jin Yu, Inbae Jang, Dong-Yun Lee, Chang Pyo Hong, Donghwan Shim†, Hojin Ryu† (2023) Nitrate enhances the secondary growth of storage roots in Panax ginseng. Journal of Ginseng Research.  doi: 10.1016/j.jgr.2022.05.009

 

Hanim Kim, Jaewook Kim, Giltsu Choi (2023) Epidermal phyB requires RRC1 to promote light responses by activating the circadian rhythm. New Phytologists. doi: 10.1111/nph.18746

 

Bae Young Choi, Suhyeon Lee, Jaewook Kim, Hyeonseon Park, Joon-Hyeok Kim, Minji Kim, Soo-Je Park, Ki-Tae Kim, Hojin Ryu† and Donghwan Shim† (2022) Comparison of Endophytic and Epiphytic Microbial Communities in Surviving and Dead Korean Fir (Abies koreana) Using Metagenomic Sequencing. Forests. DOI: 10.3390/f13111932

Jaewook Kim, Mi-Jeong Park, Donghwan Shim†, Rhim Ryoo† (2022) De novo genome assembly of the bioluminescent mushroom Omphalotus guepiniiformis reveals an Omphalotus-specific lineage of the luciferase gene block. Genomics. doi: 10.1016/j.ygeno.2022.110514

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Jeongeui Hong, Kyoung Rok Geem, Jaewook Kim, Ick-Hyun Jo, Tae-Jin Yang, Donghwan Shim†, Hojin Ryu† (2022) Prolonged Exposure to High Temperature Inhibits Shoot Primary and Root Secondary Growth in Panax ginseng. International Journal of Molecular Sciences. doi: 10.3390/ijms231911647

 

Ick-Hyun Jo*, Jaewook Kim*, Hyejin An, Hwa-Yong Lee, Yoon-Sup So, Hojin Ryu, Gi-Ho Sung, Donghwan Shim†, Jong-Wook Chung† (2022) Pseudo-Chromosomal Genome Assembly in Combination with Comprehensive Transcriptome Analysis in Agaricus bisporus Strain KMCC00540 Reveals Mechanical Stimulus Responsive Genes Associated with Browning Effect. Journal of Fungi. doi: 10.3390/jof8080886

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Ju Young Ahn*, Jaewook Kim*, Ju Yeon Yang, Hyun Ju Lee, Soyun Kim, Kwang-Soo Cho, Sang-Ho Lee, Jin-Hyun Kim, Tae-Ho Lee, Yoonkang Hur†, Donghwan Shim† (2022) International Journal of Molecular Sciences. doi: 10.3390/ijms23073681

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Hiroki Yagi, Atsushi J Nagano, Jaewook Kim, Kentaro Tamura, Nobuyoshi Mochizuki, Akira Nagatani, Tomonao Matsushita, Tomoo Shimada (2021) Fluorescent protein-based imaging and tissue-specific RNA-seq analysis of Arabidopsis hydathodes. Journal of Experimental Botany. doi: 10.1093/jxb/eraa519

 

Sara Kim, Geonhee Hwang, Soohwan Kim, Thom Nguyen Thi, Hanim Kim, Jinkil Jeong, Jaewook Kim, Jungmook Kim, Giltsu Choi, Eunkyoo Oh (2020) The epidermis coordinates thermoresponsive growth through the phyB-PIF4-auxin pathway. Nature Communications. doi: 10.1038/s41467-020-14905-w

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Shadi Rahimi, Jaewook Kim, Ivan Mijakovic, Ki-Hong Jung, Giltsu Choi, Sun-Chang Kim, Yu-Jin Kim (2019) Triterpenoid-biosynthetic UDP-glycosyltransferases from plants. Biotechnology Advances. doi: 10.1016/j.biotechadv.2019.04.016

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You-Bin Seol*, Jaewook Kim*, Se-Hong Park, Hong Young Chang (2017) Atmospheric Pressure Pulsed Plasma Induces Cell Death in Photosynthetic Organs via Intracellularly Generated ROS. Scientific Reports. doi: 10.1038/s41598-017-00480-6

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Jaewook Kim*, Kijong Song*, Eunae Park*, Keunhwa Kim, Gabyong Bae, Giltsu Choi (2016) Epidermal Phytochrome B Inhibits Hypocotyl Negative Gravitropism Non-Cell-Autonomously. The Plant Cell. doi: 10.1105/tpc.16.00487

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Junghyun Kim, Hyojin Kang, Jeongmoo Park, Woohyun Kim, Janghyun Yoo, Nayoung Lee, Jaewook Kim, Tae-Young Yoon, Giltsu Choi (2016) PIF1-Interacting Transcription Factors and Their Binding Sequence Elements Determine the in Vivo Targeting Sites of PIF1. The Plant Cell. doi: 10.1105/tpc.16.00125

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* = Equally contributed, † = Co-corresponding authors